Report a bug #357

wrong microscope type

Added by Alexandre over 5 years ago. Updated over 1 year ago.

Status:NewStart date:2015-01-23
Priority:NormalDue date:
Assignee:Daniel% Done:

0%

Category:Bug
Target version:HRM Development - Known issues

Description

Hi,

Just to report a minor bug in the HRM interface.
I used an analysis template i created on my own for 2-photon images as you can see in the biphoton_hrm screenshot.
The thing is, when i look at the results in the paramater tab (parameter_hrm attachment), i see a warning message indicating that the microscope type choosen is probably wrong. You can also see that there is written widefield instead of biphoton as microscope type in the parameter table.

Best,

L.A

biphoton_hrm.png (62.3 KB) Alexandre, 2015-01-23 16:24

parameter_hrm.png (52.5 KB) Alexandre, 2015-01-23 16:24

39
40

History

#1 Updated by Aaron about 5 years ago

  • Category set to Bug
  • Assignee set to Daniel
  • Target version set to 3.2.2

#2 Updated by Daniel almost 5 years ago

  • Target version changed from 3.2.2 to 3.2.3

#3 Updated by Aaron almost 5 years ago

  • Target version changed from 3.2.3 to 3.3.0

#4 Updated by Daniel over 4 years ago

This problem actually comes from a small mismatch between Huygens and HRM.

In HRM the multiphoton option is directly translated into 'widefield' with excitation photon count > 1.

In Huygens, however, all microscope types can have multiphoton excitation. If the file metadata states 'confocal' with excitation photon count > 1, but the HRM template states 'widefield' (and the same photon count) then there will be a redundant warning message showing in HRM.

The only way we can fix this nicely is by removing the mismatch between Huygens and HRM. Thus, we would need to enable combinations of different microscope types with the multiphoton option.

#5 Updated by Daniel over 4 years ago

Notice that not all multiphoton jobs show the warning. In fact, it should only be shown when the file metadata reports a microscope type other than widefield.

#6 Updated by Aaron over 4 years ago

  • Target version changed from 3.3.0 to 3.4.0

#7 Updated by Aaron over 3 years ago

  • Target version changed from 3.4.0 to 4.0.0

#8 Updated by Daniel about 2 years ago

  • Target version changed from 4.0.0 to 3.6.0

#9 Updated by Daniel over 1 year ago

  • Target version changed from 3.6.0 to Known issues

Also available in: Atom PDF